FUNCTION: SYS.BLASTN_MATCH

Source

1 FUNCTION blastn_match (
2   query_sequence        IN CLOB,
3 --  seqdb_cursor             blast_cur.seqdbcur_t,
4   seqdb_cursor             SYS_REFCURSOR,
5   subsequence_from      IN INTEGER  DEFAULT 1,
6   subsequence_to        IN INTEGER  DEFAULT -1,
7   filter_low_complexity IN INTEGER  DEFAULT 0,
8   mask_lower_case       IN INTEGER  DEFAULT 0,
9   expect_value          IN NUMBER   DEFAULT 10,
10   open_gap_cost         IN INTEGER  DEFAULT 5,
11   extend_gap_cost       IN INTEGER  DEFAULT 2,
12   mismatch_cost         IN INTEGER  DEFAULT -3,
13   match_reward          IN INTEGER  DEFAULT 1,
14   word_size             IN INTEGER  DEFAULT 11,
15   xdropoff              IN INTEGER  DEFAULT 30,
16   final_x_dropoff       IN INTEGER  DEFAULT 50
17 )
18 RETURN dmbmos AUTHID CURRENT_USER
19   PARALLEL_ENABLE(PARTITION seqdb_cursor BY ANY)
20   PIPELINED USING dmbmnimp;