FUNCTION: SYS.BLASTN_ALIGN

Source

1 FUNCTION blastn_align (
2   query_sequence        IN CLOB,
3   seqdb_cursor             blast_cur.seqdbcur_t,
4   subsequence_from      IN INTEGER   DEFAULT 1,
5   subsequence_to        IN INTEGER   DEFAULT -1,
6   filter_low_complexity IN INTEGER   DEFAULT 0,
7   mask_lower_case       IN INTEGER   DEFAULT 0,
8   expect_value          IN NUMBER    DEFAULT 10,
9   open_gap_cost         IN INTEGER   DEFAULT 5,
10   extend_gap_cost       IN INTEGER   DEFAULT 2,
11   mismatch_cost         IN INTEGER   DEFAULT -3,
12   match_reward          IN INTEGER   DEFAULT 1,
13   word_size             IN INTEGER   DEFAULT 11,
14   xdropoff              IN INTEGER   DEFAULT 30,
15   final_x_dropoff       IN INTEGER   DEFAULT 50
16 )
17 RETURN dmbaos AUTHID CURRENT_user
18 PARALLEL_ENABLE(PARTITION seqdb_cursor BY ANY)
19 PIPELINED USING dmbanimp;