FUNCTION: SYS.TBLAST_MATCH

Source

1 FUNCTION tblast_match (
2   query_sequence        IN CLOB,
3   seqdb_cursor             blast_cur.seqdbcur_t,
4   subsequence_from      IN INTEGER   DEFAULT 1,
5   subsequence_to        IN INTEGER   DEFAULT -1,
6   translation_type      IN STRING    DEFAULT 'blastx',
7   genetic_code          IN INTEGER   DEFAULT 1,
8   filter_low_complexity IN INTEGER   DEFAULT 0,
9   mask_lower_case       IN INTEGER   DEFAULT 0,
10   sub_matrix            IN STRING    DEFAULT 'BLOSUM62',
11   expect_value          IN NUMBER    DEFAULT 10,
12   open_gap_cost         IN INTEGER   DEFAULT 11,
13   extend_gap_cost       IN INTEGER   DEFAULT 1,
14   word_size             IN INTEGER   DEFAULT 3,
15   x_dropoff             IN INTEGER   DEFAULT 15,
16   final_x_dropoff       IN INTEGER   DEFAULT 25
17 )
18 RETURN dmbmos AUTHID CURRENT_user
19 PARALLEL_ENABLE(PARTITION seqdb_cursor BY ANY)
20 PIPELINED USING dmbmtimp;